RetrogeneDB ID: | retro_etel_102 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_1914:130080..130410(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHF5A | ||
Ensembl ID: | ENSETEG00000010741 | ||
Aliases: | None | ||
Description: | PHD finger protein 5A [Source:HGNC Symbol;Acc:18000] |
Percent Identity: | 90.91 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAY |
.AKHHPDLIFCR.QAGVA..RLCEKC.GKCVI.DSYV.PCTLVRIC.ECNY.SYQGRCVICGGPGVSDAY | |
Retrocopy | LAKHHPDLIFCRNQAGVAS*RLCEKCNGKCVIYDSYVCPCTLVRICHECNYSSYQGRCVICGGPGVSDAY |
Parental | YCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR |
YCKECTIQEKDRDGCPK.VNLGSSKTDLFYERKKYGFKKR | |
Retrocopy | YCKECTIQEKDRDGCPKTVNLGSSKTDLFYERKKYGFKKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |