RetrogeneDB ID: | retro_etel_1074 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_206893:541..1089(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000005817 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.1 % |
Parental protein coverage: | 82.59 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GEAPDYDRSQWLDVKFKLDLDFPNLPYLVDGKNKITQSNAILRYIARKHNMCGNTEEEKIRVDIMENQIM |
GEAPDYD.SQWLDVKFKLDL.FPNLPYL.DGKN.ITQSNAILRYIARKHN.CG..EEEKIRVDIMENQIM | |
Retrocopy | GEAPDYDQSQWLDVKFKLDLGFPNLPYLMDGKNQITQSNAILRYIARKHNTCGDPEEEKIRVDIMENQIM |
Parental | DFRMQLVRISYSPDHEKLKPQYLEQLPGNLKQFSLFLG-KFSWFAGEKLTFVDFLTYDVLDQNRMFEPKC |
DFR.QLV.I.Y.PDHEKLKPQYLEQLPGNLK.F.LFLG.KFSWF.GE.LTF.DFLTY.VLDQNRMFEPKC | |
Retrocopy | DFRTQLVQI-YCPDHEKLKPQYLEQLPGNLKPFPLFLG<KFSWFTGENLTFMDFLTYAVLDQNRMFEPKC |
Parental | LDEFPNLKAFMCRFEALEKIAEYMQSDRFFKLPINNKMALWGSKRC |
LDEFPNLKAF.CRFEALEKIA.YMQSDRFFKLP..NKMA.WG.KRC | |
Retrocopy | LDEFPNLKAFTCRFEALEKIAAYMQSDRFFKLPL-NKMAQWGNKRC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005380 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000003168 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000014211 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000005817 | 2 retrocopies |
retro_etel_1074 , retro_etel_1910,
|
Homo sapiens | ENSG00000134202 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000005185 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008029 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000001899 | 1 retrocopy | |
Mus musculus | ENSMUSG00000004032 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003302 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001063 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000047034 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000006821 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000006736 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009682 | 1 retrocopy |