RetrogeneDB ID: | retro_etel_1078 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_207577:1322..1654(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GABARAP | ||
Ensembl ID: | ENSETEG00000004652 | ||
Aliases: | None | ||
Description: | GABA(A) receptor-associated protein [Source:HGNC Symbol;Acc:4067] |
Percent Identity: | 60. % |
Parental protein coverage: | 97.44 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHL |
MKFVYKEEHPF.K..SEGE.I.....D.VPV..EKAPKA.I.D..K......S....GQFYFLI.K..HL | |
Retrocopy | MKFVYKEEHPFQKCHSEGENIXXXXLD*VPVTGEKAPKAWIDDQTKRHGVL*SH--IGQFYFLIQK*VHL |
Parental | RAEDALFFFVNNVIP-PTSATMGQLYQEHHEEDFFLYISYSDESV |
.AEDA.F.F.NN.IP.P.SA...QLYQEHH..DFFLY..Y.D..V | |
Retrocopy | *AEDAFFSFANNIIP<PASALLDQLYQEHH-ADFFLYVAYFDGRV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ciona intestinalis | ENSCING00000012473 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004652 | 7 retrocopies |
retro_etel_1020, retro_etel_1078 , retro_etel_1562, retro_etel_2068, retro_etel_493, retro_etel_666, retro_etel_976,
|
Echinops telfairi | ENSETEG00000012407 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015189 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000000744 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010545 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010473 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000004388 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000017936 | 1 retrocopy | |
Drosophila melanogaster | FBgn0052672 | 1 retrocopy |