RetrogeneDB ID: | retro_etel_1081 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_208282:22947..23268(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SEC11C | ||
Ensembl ID: | ENSETEG00000005115 | ||
Aliases: | None | ||
Description: | SEC11 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:23400] |
Percent Identity: | 67.89 % |
Parental protein coverage: | 55.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MVRASPVGTHLPASGLDIFGDLRKMNKRQLYY-QVLNFAMIVSSALMIWKGLIVLTGSESPIVVV-LSGS |
M...SP.G.H.P.S...IF..L..MNK.QLYY.QVLN..MI.SS.L.IWKGLI.LTGS.SPI.VV.LS.S | |
Retrocopy | MIPVSPLGMHFPESACIIFRELKQMNKCQLYY<QVLNVTMIMSSVLKIWKGLIILTGSKSPIMVV>LSCS |
Parental | MEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIV |
MEPAFH.GD.LFL.NF.E.PIR..EIVVFKVE..DIPIV | |
Retrocopy | MEPAFHQGDILFLSNFQEVPIRVDEIVVFKVERWDIPIV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000017024 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000005115 | 2 retrocopies |
retro_etel_1081 , retro_etel_1139,
|
Felis catus | ENSFCAG00000006501 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000016052 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000020427 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000009204 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000002570 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002950 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000004912 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014804 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007676 | 5 retrocopies |