RetrogeneDB ID: | retro_etel_1103 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_211992:10248..10682(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000007942 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL5 | ||
Ensembl ID: | ENSETEG00000009889 | ||
Aliases: | None | ||
Description: | ribosomal protein L5 [Source:HGNC Symbol;Acc:10360] |
Percent Identity: | 71.43 % |
Parental protein coverage: | 55.73 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTK |
LLNRF.M.KI.EGQVE..GD.Y.VESIDGQPGAFT.Y.DAGLAR.TTG.KVFGA.KG.VD.G..IP.STK | |
Retrocopy | LLNRFNMEKIAEGQVEAAGDDYHVESIDGQPGAFTRYVDAGLARITTGKKVFGAPKGTVDRGWPIPPSTK |
Parental | RFPGYDSESKEFNAEVHRKHILGQNVA-EYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHATI |
.FP...SESKEFN..VH.KH..GQ.....YMRYLMEED.D...KQFSQ.IKNN.TPDMM.E..KKAHATI | |
Retrocopy | PFPTHESESKEFNTYVHQKHNMGQSIT<SYMRYLMEED-DVA*KQFSQCIKNNITPDMMKERCKKAHATI |
Parental | RENPVYE |
REN..YE | |
Retrocopy | RENLIYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |