RetrogeneDB ID: retro_etel_1105

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_212355:1814..2282(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZDHHC7
• Ensembl ID: ENSETEG00000016077
• Aliases: None
• Description: zinc finger, DHHC-type containing 7 [Source:HGNC Symbol;Acc:18459]

Sequence

>retro_etel_1105
CGCTGCCATCGCTGCGGCGGCGGCAGGCCTGTGCGCGCCCACCACTGCAGCGTGTGTCGGCGCTGTATTCGCAAGATGGA
CCACCACTGCCCCTGGGTCAACAACTGCGTGGGCGAGGACAACCGCAAGTACTTCGTGCTATTCACCTTCTACATCGGCC
TGGCCTCGCTGCACGTGCTCCTGCTGCTCGGCGTCCCCGTCCTGCGAGGCTACATGCGCGGTGAGTGGGGCGCCAACAGC
TCCTTCTCGGCGCGGGGCTCCGTCATCTTCCTGTTCTTGGTGAGTCTGAAGGGCTTCATTTTCACCTCGGTGATGTTTGG
CACCCAGTTGCACGCCATCTGCAAGGACCAGACGAGAATTGAGCTGCTTCAGAGGGCGCCAGGCAGGTGGGGCAAAGGCA
GCAAGTGGATGAACTTGAAGGCAGTCTTTGGACACCACTTCTCTGTAGACTGGATCAACCCCTTTGTC

Alignment

ORF - retro_etel_1105 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 51.57 %
• Parental protein coverage: 50.97 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KCPKCCCIKPERAHHCSICKRCIRKMDHHCPWVNNCVGEKNQRFFVLFTMYTALSSAHALILCGFQFI-S
          .C..C....P.RAHHCS.C.RCIRKMDHHCPWVNNCVGE.N...FVLFT.Y..L.S.H.L.L.G......
Retrocopy RCHRCGGGRPVRAHHCSVCRRCIRKMDHHCPWVNNCVGEDNRKYFVLFTFYIGLASLHVLLLLGVPVLRG

Parental  CVRGQWTECSDFSPPVTVILLIFLCLEGLLFFTFTAVMFGTQIHSICNDETEIERLKSEKPTWERRLRWE
          ..RG.W...S.FS....VI.L....L.G...F.FT.VMFGTQ.H.IC.D.T.IE.L......W.....W.
Retrocopy YMRGEWGANSSFSARGSVIFLFLVSLKG---FIFTSVMFGTQLHAICKDQTRIELLQRAPGRWGKGSKWM

Parental  GMKSVFGGPPSLLWMNPFV
          ..K.VFG...S..W.NPFV
Retrocopy NLKAVFGHHFSVDWINPFV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_1105 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000004119	1 retrocopy	retro_cjac_1437,
Echinops telfairi	ENSETEG00000016077	1 retrocopy	retro_etel_1105 ,
Microcebus murinus	ENSMICG00000011194	1 retrocopy	retro_mmur_1362,
Macaca mulatta	ENSMMUG00000020674	1 retrocopy	retro_mmul_1448,
Sus scrofa	ENSSSCG00000002667	1 retrocopy	retro_sscr_267,
Tursiops truncatus	ENSTTRG00000016028	1 retrocopy	retro_ttru_363,