RetrogeneDB ID: | retro_etel_1130 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_215997:480..840(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSETEG00000009651 | ||
Aliases: | None | ||
Description: | slowmo homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:15892] |
Percent Identity: | 99.17 % |
Parental protein coverage: | 58.25 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKIWTSEHVFDHPWETVTMAAMQKYPNPMNPSVVGVDVLHRHVDPAGKLHSQRLLSTEWGLPSVVRTIIG |
MKIWTSEHVFDHPWETVTMAAMQKYPNPMNPSVVGVDVLHRHVDPAGKLHSQ.LLSTEWGLPSVVRTIIG | |
Retrocopy | MKIWTSEHVFDHPWETVTMAAMQKYPNPMNPSVVGVDVLHRHVDPAGKLHSQGLLSTEWGLPSVVRTIIG |
Parental | AARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDPG |
AARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDPG | |
Retrocopy | AARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018905 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000014548 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000009651 | 3 retrocopies |
retro_etel_1130 , retro_etel_1262, retro_etel_632,
|
Loxodonta africana | ENSLAFG00000000300 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014907 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000007560 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000016608 | 5 retrocopies | |
Mus musculus | ENSMUSG00000016257 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000005621 | 8 retrocopies | |
Ochotona princeps | ENSOPRG00000002550 | 8 retrocopies | |
Rattus norvegicus | ENSRNOG00000046644 | 2 retrocopies | |
Sorex araneus | ENSSARG00000004671 | 2 retrocopies |