RetrogeneDB ID: | retro_etel_1137 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_217022:11355..11958(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000004543 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCNI | ||
Ensembl ID: | ENSETEG00000000952 | ||
Aliases: | None | ||
Description: | cyclin I [Source:HGNC Symbol;Acc:1595] |
Percent Identity: | 89.27 % |
Parental protein coverage: | 54.38 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKFPGPLENQRLSFLLEKAISREAQXXXXXXXXXXXXXNVSPSQRDEVIQWLAKLKYQFNLYPETFALAS |
MKFPGPLENQRLSF.LEKAISREAQ.............NVSPSQRDEVIQWL.KLKYQFNLYPETFALAS | |
Retrocopy | MKFPGPLENQRLSFVLEKAISREAQMWKVNVPQMPTSQNVSPSQRDEVIQWLVKLKYQFNLYPETFALAS |
Parental | SLLDRFLATVKAHPKYLSCIAISCFFLAAKTVEEDERIPVLKVLARDSFCGCSSSEILRMERIILDKLNW |
SLLDRFLAT.KAHPKYLSCIAISCFFLAAKTVEEDERIPVLKVLARDSFCGCSS.EILRMERIILDKLNW | |
Retrocopy | SLLDRFLATIKAHPKYLSCIAISCFFLAAKTVEEDERIPVLKVLARDSFCGCSSTEILRMERIILDKLNW |
Parental | DLHTATPLDFLHIFHAIAVSTRPQLLFSFPKLSPSQHLAFLTKQLLHCMACNQLLQFKGSMLALG |
DLHTATPLDFLHI....AVSTRPQLLFSFPKLSPSQHLAFLTKQLLHCMACNQLLQFKGSMLA.G | |
Retrocopy | DLHTATPLDFLHI----AVSTRPQLLFSFPKLSPSQHLAFLTKQLLHCMACNQLLQFKGSMLAPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014768 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000952 | 1 retrocopy |
retro_etel_1137 ,
|
Loxodonta africana | ENSLAFG00000029218 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019904 | 1 retrocopy | |
Mus musculus | ENSMUSG00000063015 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000009907 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000011865 | 1 retrocopy |