RetrogeneDB ID: | retro_etel_1155 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_219358:6101..6737(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000005055 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000004648 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 55.61 % |
Parental protein coverage: | 75.63 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | PQNLLEASDSKNSSPVTTSLGTKEDGTSLQMSSAEPPYSETG-SPLPSSVDLLLQKSPDSSTSPKVQLPA |
P..L.E.S...N.............G...Q.S.A..PYSET..SPLPSS.DLLLQ.S.D.ST.PK..LP. | |
Retrocopy | PMELYEGSPQHNKFTGSPQPSAGPVGQPMQISPAAAPYSETAVSPLPSSMDLLLQDSLDPSTRPKIHLPV |
Parental | SAETDAARKESKGPGKKQKVRTVFSQTQLCILK-DHFQKQKYLSLQQM-QELSEVLNLSYKQVKTWFQNQ |
S.E.....KE..G..KK.K.RTVFSQTQLCI.K...FQKQKYLSL.QM.QELS.VLNLSY.QVKT.FQNQ | |
Retrocopy | SEEKSPVKKEI*GQHKKHKARTVFSQTQLCIPK<NRFQKQKYLSLWQM>QELSGVLNLSYRQVKTLFQNQ |
Parental | RMKCKRWQKTTNWSKNNHAVTQKVSAPTEYLDVCASYHQGCLPSGNLPMWSNQSWNSQAWNNQSWNSQAW |
R.KC.RW.KTTN.SKN.H.VT.K.SA..E.L..CA..HQ..LPS.NLP.WS..............N.QA. | |
Retrocopy | RGKC*RWPKTTNLSKNDHGVTLKLSASAECLHLCAASHQAFLPSENLPVWSDXXXXXXXXXXXXXNHQA* |
Parental | NNQS |
.NQ. | |
Retrocopy | SNQT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |