RetrogeneDB ID: | retro_etel_1157 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_219394:4060..4656(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSETEG00000007922 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 94. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSSGTAKIGHPAPNFKATAVMPDGQFKDISLTDYKGKYIVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN |
MS.GTAKIGHPAPNFKATAVMPDGQFKDISLTDYKGKYIVF.FYPLDFTFVCPTEI.AFSDRAEEFKKLN | |
Retrocopy | MSPGTAKIGHPAPNFKATAVMPDGQFKDISLTDYKGKYIVFSFYPLDFTFVCPTEITAFSDRAEEFKKLN |
Parental | CQVIGASVDSHFCHLAWINTPKKEGGLGPMNIPLVSDSKRTIAQDYGVLKVDEGISFRGLFIIDDKGILR |
C.VIGASVDSHF.HLAWINTPKKEGGLGPMNIPLVSD.K.TIAQDYGVLKVDEGISFRGLFIIDDKGILR | |
Retrocopy | CRVIGASVDSHFYHLAWINTPKKEGGLGPMNIPLVSDPKGTIAQDYGVLKVDEGISFRGLFIIDDKGILR |
Parental | QITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSD-TIKPDVQKSREYFAKQK |
QITVNDLPVGRSVDETLRL.QAFQFTD.HGEVCPAGW.PGS..TIKPDVQKSREYFAKQK | |
Retrocopy | QITVNDLPVGRSVDETLRLIQAFQFTDEHGEVCPAGWTPGSE<TIKPDVQKSREYFAKQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |