>retro_etel_1220
ACTGTTACAATTTTCTTTGAAAACAAGTGGCAAATTGAAAGACAAATTATTTGGGGGGATGTCCAGCTACCAGCAGACTA
CACTAAAGACATCACGGAATGGGATGAGGTAGAGGTTTATTCTCGAGCCAAGGGACAGGAACTTTGTGGCTGGTGGCTGG
CTTGGACACAGCTGATAAAAGGAGATTTCTATGTCATTGAATATGCTGGCAGCAGTGCTACTTACTATGAAATTGTCACC
CTGGAGCGACCTTGGCCAGTCAATCCCAACCCCCTTGCAACCAAAGGCAGCTTCTTCAAGGTCACCATGGCTGTTCCTGA
GGATCTCAGAGAGGCCTGCTTCAAGGAAAACATCCATAAGAGTTCAAAACAGATTTGAGAGCTAGCTGCATCTTTCTCAA
CTTCACAAATAGCAAGCTGTTTATTCTGCCAATCCCTTTGAAGTGGGAATCTCTGTTGGGGAACTTGAATTTTTGAGAAC
TAAGCACCAAATTGCTACTTATGTCTCCTAATGAAGAAGTTACCAAACACCTAGAGACAAGTAAGAAATTGGCAGCAGCA
TCCTAGGAGGAGTTCACAGTGCGAGAGGATCTGATGGGACTGGAAATTGGGACTTACACTGCTAACATCCAGGAGGTCTG
AAAATTACCTGGGGTGACCACCATTGAGATGGATGAAGAGACCTGTGGTTTCCACCTCTATGGGAAGATTCTTGAGGCAT
GCCGGCAGGCCTGAAGTTACCTTGAGTTTTCTGAGAACTTGGTGCCAGTACCCAGGAATCTTGTTGTCAAAGGCACTGGA
AGGAACGGGAAAGTGATCCAGGAGATTGTGGACAAATCTGCTGTGGTGAGGGTCTGAGTGCAAGGAGAAAATGACAAGAA
GAAACCAAGGGAGGAGGGAATGATTCCCTGCATATTTGTTGGCACCCGAGGGAATATCAGCAATTCTCAGTCTCTGCTGG
AATGTCACCTTTCCTACCTGCAGTAGCTGGAGCAGCTCTGTTTGGAGAGGCTGCAA
ORF - retro_etel_1220 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
72.46 % |
Parental protein coverage: |
51.27 % |
Number of stop codons detected: |
6 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | SVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMKGDFYVIEY |
| .VTIFFEN.WQ.ERQI..GDV.LP..ADY.K.ITE.DEVEVYSRA..QE.CGWWLA.....KGDFYVIEY |
Retrocopy | TVTIFFENKWQIERQIIWGDVQLP--ADYTKDITEWDEVEVYSRAKGQELCGWWLAWTQLIKGDFYVIEY |
|
Parental | AACDATYNEIVTLERLRPVNPSPLATKGSFFKVTMAVPEDLREACSNENVHK-EFKKALGANCIFLNITN |
| A...ATY.EIVTLER..PVNP.PLATKGSFFKVTMAVPEDLREAC..EN.HK.EFK..L.A.CIFLN.TN |
Retrocopy | AGSSATYYEIVTLERPWPVNPNPLATKGSFFKVTMAVPEDLREACFKENIHK<EFKTDLRASCIFLNFTN |
|
Parental | SELFILSTTEAPVKRASLL-DMHFRSLRTKLLLMSRNEEATKHLETSKQLAAAFQEEFTVREDLMGLAIG |
| S.LFIL.....P.K..SLL....F..L.TKLLLMS.NEE.TKHLETSK.LAAA..EEFTVREDLMGL.IG |
Retrocopy | SKLFILPI---PLKWESLLGNLNF*ELSTKLLLMSPNEEVTKHLETSKKLAAAS*EEFTVREDLMGLEIG |
|
Parental | THGANIQQARKVPGVTAIELGEETCTFRIYGETPEACRQARSYLEFSEDSVQVPRNLVGKVIGKNGKVIQ |
| T..ANIQ...K.PGVT.IE..EETC.F..YG...EACRQA.SYLEFSE..V.VPRNLV.K..G.NGKVIQ |
Retrocopy | TYTANIQEV*KLPGVTTIEMDEETCGFHLYGKILEACRQA*SYLEFSENLVPVPRNLVVKGTGRNGKVIQ |
|
Parental | EIVDKSGVVRVRVEGDNDKRNPREEGMVPFIFVGTRENISNAQALLEYHLSYLQEVEQLRLERLQ |
| EIVDKS.VVRV.V.G.NDK..PREEGM.P.IFVGTR.NISN.Q.LLE.HLSYLQ..EQL.LERLQ |
Retrocopy | EIVDKSAVVRV*VQGENDKKKPREEGMIPCIFVGTRGNISNSQSLLECHLSYLQ*LEQLCLERLQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1220 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.