RetrogeneDB ID: | retro_etel_1226 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_231740:2684..3077(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000005137 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2R2 | ||
Ensembl ID: | ENSETEG00000011574 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2R 2 [Source:HGNC Symbol;Acc:19907] |
Percent Identity: | 65.41 % |
Parental protein coverage: | 87.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | GDVCISILH-PPVDDPQSG-ELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGK |
GD.CISILH..PVDDPQSG.ELPSE.WNPTQN.R.ILLSVISLL.EP.TFSPA.VDASV..R.W..SKG. | |
Retrocopy | GDMCISILH>SPVDDPQSG<ELPSEWWNPTQNIRIILLSVISLLKEPSTFSPAKVDASVVYRRWKESKGT |
Parental | DKEYAEIIRKQVSATKAEAEKDGVKVPTTLAEYCIKTKVPSNDNSSDLLYDDLYDDDIDDEDE |
D.EY..IIRKQV..TK..AE.DGVKVPT.LA.YC.KT..P..D...DL.Y.....D....E.. | |
Retrocopy | DREYTDIIRKQVLGTKVDAELDGVKVPTKLAGYCVKTRAPAPDDGLDLFYEAYCEDGETEEGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000011574 | 1 retrocopy |
retro_etel_1226 ,
|
Myotis lucifugus | ENSMLUG00000006793 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023588 | 3 retrocopies | |
Sorex araneus | ENSSARG00000005734 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013265 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000010587 | 1 retrocopy |