RetrogeneDB ID: | retro_etel_1275 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_239139:4453..5226(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000013168 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPC1B | ||
Ensembl ID: | ENSETEG00000009924 | ||
Aliases: | None | ||
Description: | actin related protein 2/3 complex, subunit 1B, 41kDa [Source:HGNC Symbol;Acc:704] |
Percent Identity: | 84.23 % |
Parental protein coverage: | 69.35 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ARCVRWAPLENKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRI |
A.CVRWA.LENKFAVGSGSRVI.ICYFEQENDWWVCKHIKKPIRSTVLSLD.HP.NVL.AAGSCDFKCRI | |
Retrocopy | AVCVRWAALENKFAVGSGSRVIAICYFEQENDWWVCKHIKKPIRSTVLSLDRHPSNVLQAAGSCDFKCRI |
Parental | FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLANADKKMAVA |
FSAYI.EV..RPAPTPWGS.MP.GELMF.SSSSCGWV.GVCFSASG.RVAWVSHDS.VCLA.ADK.MAVA | |
Retrocopy | FSAYIREVGQRPAPTPWGSQMPLGELMFGSSSSCGWVRGVCFSASGGRVAWVSHDSAVCLASADK-MAVA |
Parental | TLASETLPLLAVTFITENSLVAAGHDCFPVLFTYDSTVGTL-SFGGRLDVPKQSSQRGLTARERFQNLDK |
TLAS.TLPLLAVTFI.ENSLVAAGH..FPVL.......G...SFGGRLDVPKQSSQRGLTARERFQN.DK | |
Retrocopy | TLASGTLPLLAVTFIPENSLVAAGHHGFPVLSPTTAR*GRARSFGGRLDVPKQSSQRGLTARERFQNVDK |
Parental | KASTEGGAVSGAGIDSVHKNSVSQISVLRG-GKAQCAQFCTTGMDGGMSI |
.ASTEGGAVSGAGI.SVHK.S.SQ.SVL.G.GKAQCAQFCTTG.DGGMS. | |
Retrocopy | EASTEGGAVSGAGIHSVHKHSASQSSVLSG<GKAQCAQFCTTGTDGGMSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000046248 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000015081 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015849 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000009924 | 2 retrocopies |
retro_etel_1076, retro_etel_1275 ,
|
Gorilla gorilla | ENSGGOG00000013186 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000017424 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010933 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000016522 | 1 retrocopy | |
Mus musculus | ENSMUSG00000029622 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000010872 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000000991 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000007625 | 1 retrocopy |