RetrogeneDB ID: | retro_etel_128 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_2389:23345..23832(-) | ||
Located in intron of: | ENSETEG00000000397 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000015365 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.42 % |
Parental protein coverage: | 63.81 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAGQVTMQLLFLLLLVADGWGIMRQSRPARTELLNVCMDAKHHKEKPGPEDKLHDQCTPWKKNACCSVNT |
MAGQ.TMQLLFLLLLVADGWGIMRQ...A..ELLNVCMD.KHHKEKPGPEDKLHDQC.PW.KNACCS.NT | |
Retrocopy | MAGQMTMQLLFLLLLVADGWGIMRQTMEAWMELLNVCMDTKHHKEKPGPEDKLHDQCSPW-KNACCSDNT |
Parental | SQEAHKDVSYLYRFNWDHCGKMQPACKRHFIQDTCFYECSPNLG-PWIQQVDQSWRKERVLNVPLCQEDC |
SQEAHK...Y.YRFNWDHCGKMQPACKRHF.QD.CF....P.LG.PW.QQVDQS.RKERVLNVPLCQEDC | |
Retrocopy | SQEAHKVFPYMYRFNWDHCGKMQPACKRHFSQDACF-*VLPQLG>PWLQQVDQSRRKERVLNVPLCQEDC |
Parental | QMWWEDCRSSYTCKTNWHKGWNWTS |
Q...EDC..SYTCKTNWHKGWNWTS | |
Retrocopy | QR**EDCHLSYTCKTNWHKGWNWTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000005777 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015224 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000000856 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015365 | 2 retrocopies |
retro_etel_1160, retro_etel_128 ,
|
Myotis lucifugus | ENSMLUG00000014126 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000008017 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008032 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008042 | 1 retrocopy | |
Mus musculus | ENSMUSG00000001827 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000165 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000641 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000003503 | 3 retrocopies |