RetrogeneDB ID: | retro_etel_1281 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_240249:2673..3418(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS6 | ||
Ensembl ID: | ENSETEG00000001584 | ||
Aliases: | None | ||
Description: | ribosomal protein S6 [Source:HGNC Symbol;Acc:10429] |
Percent Identity: | 95.22 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MKLNISFPATGCQKLIEVDDERKL-RTFYEKRMATEVAAEALGDEWKGYVVRISGGNDKQGFPMKQGVLT |
MKLNISFPATGCQKLIEVDDERKL.RTFYEK.MATEVAA.ALGDEWKGYVVRISGGNDK.GFPMKQGVLT | |
Retrocopy | MKLNISFPATGCQKLIEVDDERKL<RTFYEK*MATEVAAGALGDEWKGYVVRISGGNDKRGFPMKQGVLT |
Parental | HGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGLKRAS |
HGRV.LLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPR.LG.KRAS | |
Retrocopy | HGRVCLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRCLGPKRAS |
Parental | RIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKR-RRIALKKQRTKKNKEEAAE |
RIRKLFN.SKEDDV.QYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHK..RRIALKKQRTKKNKEEAAE | |
Retrocopy | RIRKLFNFSKEDDVCQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKA<RRIALKKQRTKKNKEEAAE |
Parental | YAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK |
YAKLLAKR.KEAKEKRQEQIAKRRRLSSLRASTSKSESSQK | |
Retrocopy | YAKLLAKRVKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |