RetrogeneDB ID: | retro_etel_1284 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_241253:3109..3422(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000017246 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000001712 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.11 % |
Parental protein coverage: | 72. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | HVIRINKMLSCAGADRLQTGMRGAF-GKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFP-GR |
H.IRI..MLSCAG.DRLQTGMRGA..GK.QGTVA..HIGQVI.S.RT.LQ.KE.VIE.LR.AK..FP.G. | |
Retrocopy | HIIRI-QMLSCAGTDRLQTGMRGAW<GKSQGTVAGAHIGQVIVSTRTQLQDKEPVIETLRGAK--FP>GT |
Parental | QKIHISKKW-GFTKFNADEFEDMVAEKRLIPDGCG-VKYIPN |
.KIH.SKKW.GFTK.NADEFEDMVA.KRLIP.GCG..KY.PN | |
Retrocopy | PKIHFSKKW<GFTKLNADEFEDMVAKKRLIPVGCG<IKYTPN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000004369 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000001712 | 10 retrocopies |
retro_etel_1073, retro_etel_1284 , retro_etel_1517, retro_etel_1654, retro_etel_249, retro_etel_338, retro_etel_403, retro_etel_47, retro_etel_538, retro_etel_631,
|
Gorilla gorilla | ENSGGOG00000000131 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000031860 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013163 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000005494 | 5 retrocopies | |
Monodelphis domestica | ENSMODG00000008731 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000003734 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004067 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000011407 | 7 retrocopies |