RetrogeneDB ID: | retro_etel_1304 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_244584:2554..3260(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL15 | ||
Ensembl ID: | ENSETEG00000001724 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L15 [Source:HGNC Symbol;Acc:14054] |
Percent Identity: | 94.92 % |
Parental protein coverage: | 90.38 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RPRLGFEGGQTPFYIRIPKYGFNEGHSFRHQYQPLSLNRLQYLIDLGRIDPTQPIDLTQLVNGRGVTIQP |
RPRLGFEGGQTPFYIR.PKY.FNEGHSFRHQ.QPLSLNRLQYLIDLGRI.PTQPIDLTQLVNGRGVTIQP | |
Retrocopy | RPRLGFEGGQTPFYIRTPKYRFNEGHSFRHQ*QPLSLNRLQYLIDLGRIYPTQPIDLTQLVNGRGVTIQP |
Parental | LKRDY-GVQLVEEGADNFTAKVNIEVQLASELAIAAIEKNGGVVTTAFYDPRSLEILCKPVPFFLRGQPI |
LKRD...VQLVE.GADNFTAKVNIEVQLASELAIAAIEKNGGVVTTAFYDPRSLEILCKPVPFFLRGQPI | |
Retrocopy | LKRDF>SVQLVEGGADNFTAKVNIEVQLASELAIAAIEKNGGVVTTAFYDPRSLEILCKPVPFFLRGQPI |
Parental | PKRMLPPETLVTYYTDARNRGYLADPAKFPEARLELAKKYGYILPDITKDELFKMLRARKDPRQIFFGLA |
PKRMLPPETLVTYYTDARNRGYLADPAKFPEARLELAKKY.YILPDI.KDE.FKMLRARKDP.QIFFGLA | |
Retrocopy | PKRMLPPETLVTYYTDARNRGYLADPAKFPEARLELAKKYRYILPDIMKDEHFKMLRARKDPQQIFFGLA |
Parental | PGWVVNMPDKKILKPVDENLTKYYSS |
PGWVVNMPDKKILKPVDENLTKYYSS | |
Retrocopy | PGWVVNMPDKKILKPVDENLTKYYSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001174 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000006988 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000005299 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000016719 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017664 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000001454 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000001724 | 1 retrocopy |
retro_etel_1304 ,
|
Mustela putorius furo | ENSMPUG00000010533 | 1 retrocopy | |
Mus musculus | ENSMUSG00000033845 | 2 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000007286 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003768 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000000921 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000008566 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000030578 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014106 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011844 | 2 retrocopies |