RetrogeneDB ID: | retro_etel_1309 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_245050:585..1099(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSETEG00000007508 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 64.77 % |
Parental protein coverage: | 51.51 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | NKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGK-DYDVTANS |
N.IT.VGVG..GM.CAI.I..K.L.DEL.LV.VME.KLKGEMMDL...SLFLRTPKIVSGK.D..VT.NS | |
Retrocopy | NQITLVGVGVTGMFCAIGIFIKGLVDELTLVNVMENKLKGEMMDL*LHSLFLRTPKIVSGK>DHNVTGNS |
Parental | KLVIITAGARQQEGES-RLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVD-ILTY-VAWKISGFPKN |
.LVI.TA...Q.EGES...NLVQRN..IF.FII.NVVK.SP.C.L...SNPV....TY..A.KI..F.KN | |
Retrocopy | TLVINTASSCQ*EGES<QCNLVQRNLHIFNFIISNVVKHSPHCRLSVASNPVN>TFTY>LAQKINVFLKN |
Parental | RVIGSGCNLDSARFRYLMG-ERLGVHPLSCHGWVLG |
.VIG.G.NLDSA.F.YLM..ERL..H.L...GWVLG | |
Retrocopy | PVIGRGGNLDSALFSYLMW<ERLRIHLLNSCGWVLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |