RetrogeneDB ID: | retro_etel_1327 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_247468:2472..2923(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSETEG00000005968 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 73.86 % |
Parental protein coverage: | 96.18 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SPATAPHPLKMYACAKFVSTPSLVRSTSQLLSRPLSVLVQKRPETLSDERFSSLTAPRSQTSLVPSRSFQ |
S..T.PHPLK...C.KFVS.PSLVRSTSQLLS.P.SV.VQK..ETL.DE.FSSLTAP.S.TSL.P.RSF. | |
Retrocopy | SLGTIPHPLKIFTCTKFVSSPSLVRSTSQLLS*PSSVFVQKQLETLTDEHFSSLTAPHSLTSLIPNRSFL |
Parental | TSTVSRDIDTAAKFIGA-GAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF |
.S..SRDIDTA.KFI.A..AATVGVAGSGA.IGT.F..LI...AR.PSLKQQ.FSY.IL.FALSEAMG.F | |
Retrocopy | ASPISRDIDTADKFIEA<QAATVGVAGSGASIGTGFRNLILSSARKPSLKQQRFSYIILDFALSEAMGTF |
Parental | CLM-VAFLILFAM |
CLM.VAFLILFAM | |
Retrocopy | CLM<VAFLILFAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |