RetrogeneDB ID: | retro_etel_1340 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_249062:2299..2626(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000008077 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | JTB | ||
Ensembl ID: | ENSETEG00000008256 | ||
Aliases: | None | ||
Description: | jumping translocation breakpoint [Source:HGNC Symbol;Acc:6201] |
Percent Identity: | 65.77 % |
Parental protein coverage: | 74.66 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | EKQSGSTSNVPCWLVEEFVVSEECAPCSNFQAKTIAECSSTGYLE-KITCSSSKKNEFKSCRSAVREQHL |
..........PCWL..EFVV.EECAP.SNFQA.T.AEC...G.LE.KITCSSSKK.EFKSC.S.....HL | |
Retrocopy | QEEAPGQEEKPCWLLGEFVVTEECAPHSNFQAATMAECGPIGSLE>KITCSSSKKIEFKSCCSLSMMEHL |
Parental | FWKFEGAVLGLALVFACLVILRQRLLDRKALE-KVRKQIES |
FWKF.G.V..LALVFACL.IL.QRLLD.KALE.KV.KQI.S | |
Retrocopy | FWKFQGVVVALALVFACLIILHQRLLDQKALE<KVQKQIKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002520 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009973 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000000740 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008256 | 1 retrocopy |
retro_etel_1340 ,
|
Felis catus | ENSFCAG00000012590 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000013299 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011788 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000003210 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000791 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000006559 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012646 | 1 retrocopy |