RetrogeneDB ID: | retro_etel_1348 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_251086:3716..3971(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSMCE2 | ||
Ensembl ID: | ENSETEG00000019897 | ||
Aliases: | None | ||
Description: | non-SMC element 2, MMS21 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:26513] |
Percent Identity: | 84.71 % |
Parental protein coverage: | 54.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EKFVQYKQR-KELKKQYGLQADREVDGTEGVDEDMIVTQSLTNFICPITQLEMKKPVRNKVCGHTYEEEA |
EKFVQYKQ..KELKKQYGL.ADRE.DGTEGVD.DMIVTQS.TNFICP.TQL.MK.PV.NKVCGHTYEEEA | |
Retrocopy | EKFVQYKQQLKELKKQYGLPADREADGTEGVDVDMIVTQSQTNFICPVTQLKMKRPVKNKVCGHTYEEEA |
Parental | IVRIVESKHRRNKKA |
IVRIV.SK.RR.KKA | |
Retrocopy | IVRIVDSKRRRTKKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009394 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000019897 | 1 retrocopy |
retro_etel_1348 ,
|
Macaca mulatta | ENSMMUG00000003542 | 1 retrocopy | |
Mus musculus | ENSMUSG00000059586 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000015798 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000003964 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000005371 | 1 retrocopy |