RetrogeneDB ID: | retro_etel_1350 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_251319:3365..3594(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPS24 | ||
Ensembl ID: | ENSETEG00000016782 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein S24 [Source:HGNC Symbol;Acc:14510] |
Percent Identity: | 67.9 % |
Parental protein coverage: | 55. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MAAPVCSR-AFGLRVLAGNPELLGAWRALH-TSSACAKNRAARVRV-GKGDKPVTYEEAHA-PHYIAHRK |
MAAPVCSR.AFGLRVLAGN........A.H..S....KNRAARVRV.GKGDKP.TYEEAHA.PHYIAHRK | |
Retrocopy | MAAPVCSR<AFGLRVLAGN*AAEHPASAAH>SSARAKKNRAARVRV<GKGDKPGTYEEAHA<PHYIAHRK |
Parental | GWLSQHTGNSG |
GWL.......G | |
Retrocopy | GWLDGDDHTAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017491 | 1 retrocopy | |
Bos taurus | ENSBTAG00000007398 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003106 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016853 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000016782 | 1 retrocopy |
retro_etel_1350 ,
|
Homo sapiens | ENSG00000062582 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005692 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000011905 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002405 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000013889 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019127 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000015911 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000002938 | 1 retrocopy |