RetrogeneDB ID: | retro_etel_1367 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_255491:1865..2432(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000002577 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DEK | ||
Ensembl ID: | ENSETEG00000018188 | ||
Aliases: | None | ||
Description: | DEK oncogene [Source:HGNC Symbol;Acc:2768] |
Percent Identity: | 79.37 % |
Parental protein coverage: | 57.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LTTQVSSLQRETFTIAQGKGQTLCEPHRMDFFATKKKTDDLRN----LHKLQRTVCSLKKNLGQFSDFLL |
LT.QVSSLQRE.FTIAQGK.Q.LCE..R..FF..KKKTD.LRN....L.....TV.SLKKN.GQFS.F.. | |
Retrocopy | LTMQVSSLQREPFTIAQGK*QKLCEIERIHFFLSKKKTDELRNLHKLLYNRPGTVSSLKKNVGQFSGFPF |
Parental | EKGSAQYK-KEE----FRNAMLKSICEVLDLERSGVNSELVKRILNFLMHPKPSGKPLPKSKKSSSKGSK |
EKGSAQYK.KEE....FRNAMLKSICE.LDLERSGVNSELVKRI.NFL.HPKP.GKPL.KSKKSSSKGS. | |
Retrocopy | EKGSAQYKKKEEMLKKFRNAMLKSICEILDLERSGVNSELVKRIWNFLIHPKPTGKPLSKSKKSSSKGSQ |
Parental | KERSSSGMARKGKRTKCPEILSDESSSDEDEKKNQEESSDDEDKESEEE |
.ERSSSGMARKGKRTKCPEILSDESSSDE.EKK.QEESSDDEDKESEEE | |
Retrocopy | PERSSSGMARKGKRTKCPEILSDESSSDEAEKKTQEESSDDEDKESEEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000010184 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018188 | 1 retrocopy |
retro_etel_1367 ,
|
Loxodonta africana | ENSLAFG00000004470 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019763 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000003869 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000007750 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000001075 | 1 retrocopy |