RetrogeneDB ID: | retro_etel_1377 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_256412:10777..11396(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C12orf49 | ||
Ensembl ID: | ENSETEG00000016892 | ||
Aliases: | None | ||
Description: | chromosome 12 open reading frame 49 [Source:HGNC Symbol;Acc:26128] |
Percent Identity: | 84.43 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 6 |
Parental | MVNLAAMVWRRLLRKRWVLALVFGLSLVYFLTSTF-KQE-ERAVRDRNLLQVQDRDQPIPWKVQFNLGNS |
MVNLAAMV..RLLRKRWVLALVFGL.LVYFLTSTF...E.E.....RNLLQVQD.DQPIPWKVQFNLGNS | |
Retrocopy | MVNLAAMVGGRLLRKRWVLALVFGLLLVYFLTSTFKQEE<ESSQSPRNLLQVQDGDQPIPWKVQFNLGNS |
Parental | SR-PSNQCRNSIQGKHLITDELGYVCERKDLLVNGCCNINVPSTK-QYCCNGCLSN-GCCSAYEYCVSCC |
SR.P...CRNSIQGKHLITDELG.VCERKDLLV.GCC.INVPSTK.Q..CNGCLSN.GCCSAYE.CVSCC | |
Retrocopy | SR>PA-MCRNSIQGKHLITDELGWVCERKDLLVSGCCHINVPSTK>Q*WCNGCLSN>GCCSAYECCVSCC |
Parental | LQPNKQLLLERFLNRAAVAF-QNLFLAVEDHFE-LCLAKCRTSSQSVQHENTYRDPIAKYCYGESPPELF |
LQP.KQLLLER.LNRAAVAF.QNLF.AVEDH.E.LCLAKCR.SSQSVQHENTYRDPIAK.CYGESPPELF | |
Retrocopy | LQPSKQLLLERSLNRAAVAF>QNLFQAVEDHSE>LCLAKCRASSQSVQHENTYRDPIAKCCYGESPPELF |
Parental | PA |
PA | |
Retrocopy | PA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012481 | 2 retrocopies | |
Bos taurus | ENSBTAG00000047139 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009570 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001294 | 9 retrocopies | |
Echinops telfairi | ENSETEG00000016892 | 3 retrocopies |
retro_etel_1064, retro_etel_1377 , retro_etel_410,
|
Homo sapiens | ENSG00000111412 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015690 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000011912 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018247 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000005500 | 1 retrocopy |