RetrogeneDB ID: | retro_etel_1378 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_256460:5591..5993(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMA16 | ||
Ensembl ID: | ENSETEG00000009734 | ||
Aliases: | None | ||
Description: | translation machinery associated 16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25638] |
Percent Identity: | 54.35 % |
Parental protein coverage: | 67. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | RNEKALRLNIIGEKLQWFQNHLDAKK-EYSKKDACALIESYLNRFSSELEQIELHNSIKDRQGRRHVSRE |
R..KAL...I.GEKLQ.FQNHLDAKK..YS.K..CA.IESYL...S.EL......NSI.DRQ..RH.S.. | |
Retrocopy | RIKKALTVHITGEKLQRFQNHLDAKKVDYSEKHTCAFIESYLYQLSHELKE----NSIQDRQAWRHYSQA |
Parental | MVIKQTMERERQQYEGYGLEIPDIVDAGNLKTFREWDFDLKKLPNIKMRKI-CKNDAIPKKCKKKNVT |
.V.K...E.E.QQ..GY.LEIPD..DA...K.FRE.D..LK.....K.RKI..KN....K.CK.KN.T | |
Retrocopy | TVLK*RVEQEGQQFKGYDLEIPDNEDANHMKNFRE*DLNLKD*SHVKIRKIWAKNSILCKNCKRKNAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006702 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000001119 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000006820 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000009734 | 1 retrocopy |
retro_etel_1378 ,
|
Homo sapiens | ENSG00000198498 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000025324 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000001134 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000004482 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000002170 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025591 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006466 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000001860 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015167 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000023618 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000014188 | 3 retrocopies | |
Sorex araneus | ENSSARG00000003780 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000024763 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000017224 | 7 retrocopies | |
Tarsius syrichta | ENSTSYG00000008284 | 1 retrocopy |