>retro_etel_1387
TCAGGCAACATTTCCAGAAACCTGAAATACAAAGATTTATTTGATCCACTTGAAAGTGATGAAGATAAAGCAAGTATTCA
TGGTGAACTAGGTTCAAATGAAGAAGAAATAGCTGAAGAAAAATAAGGGATTTTTGAAATGGATGAAGGTTTTGACCTTG
AAGAAAATGAAGACAGTAAACAATATAAAGGATTACGATGTGTGACCTTTGCTCTACCAAATGAAAATGAAACTGAAGAT
CTACATAAGTTAAATGTAAAGAAAGATTCTGATGAAATTAAATAATCGTTTGAAAAAAAGACAGGAAAAGAATGAGAAGA
TTGCATTTTTAGAAAAAGAACTGTTGGGGGAAAAACACATGGCAGCTTCAAGGGGAAGTAACAGCACAAAAGAGACCAGA
AAACAGCCTTCCAGAGGAGACCCCGCACTTCGACCATGCAGTCCGGCTGGCACCTGTGATCACAGAGGAAACCACCCTTC
AACTAGAAGATATTATTAAGCAGAGGATAAAAGATCGGGCTTGGGGTGATGTAGTACATAAATAAAAACCCAAAGAAGAC
ACATATGAATGTAAAAAGCATTTAATATTAGACCATGAGAAAAGGAAATTGAGTCTTGCGGAAATTTATGAACAGGAATA
TATCAAACTCAGCCAGCAAAAAACAACAGAAGAAGAAAATCCAGAGCATGTAGAAATTCAGAAGATGATGGATTTGCTTT
TCTTAAAATTGGATGCCCTTTCAAATTTCCACTTCATACCTAAACCTTCTGCACCTGAGATTAAAGTTGTGTCAAATCTC
CCAACAATAGCCGTGGAAGAAGTAGCCCCAGTGAGTGTTAGTGATGAAACTCTCTTGGCCCCTGAGGAAATCAAGGAAAT
AAATAAAGCTGGAGACATAAAAACAGCTGCTGAGAAACCAGCCACAGACGAGAAATGAGAACGAAGGAAAAAGAAATATC
AAAAACATATGAACATAAATTCAAAGGAAACGCAGAGTAAATTGCTAGAAAAGTGTGGCCCAGATCAGGCAGGGAAATAC
ACCAAAGCATTGGCCTCAAATAAATTAAAACAGTTGACAAAGGCAGGCAAAGCATCCCTACTGAAGGATGATGGGAAAGA
CAAGACCTTGAAGTCATCTCAAGCATTCTTTTCTAAGTTACAAGATCAAGTGAAGAAGCAAATCCACGACAAGAAGAAAA
CAGAAATAAGAAAACACAAA
ORF - retro_etel_1387 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
84.35 % |
Parental protein coverage: |
97.36 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | SGKSSRNLKYKDFFDPLESDEDKASVHDELGSNEEEMAEEK-DIFDMDEGFDLEENEDGKQHKGLRRVTF |
| SG..SRNLKYKD.FDPLESDEDKAS.H.ELGSNEEE.AEEK..IF.MDEGFDLEENED.KQ.KGLR.VTF |
Retrocopy | SGNISRNLKYKDLFDPLESDEDKASIHGELGSNEEEIAEEK*GIFEMDEGFDLEENEDSKQYKGLRCVTF |
|
Parental | ALPDDNETEELNTLSVKKDSGEIKSSFEK-RQEKMNEKIASLEKELLEKK-PWQLQGEVTAQKRPENSLL |
| ALP..NETE.L..L.VKKDS.EIK.SFEK.RQEK.NEKIA.LEKELL..K..WQLQGEVTAQKRPENSL. |
Retrocopy | ALPNENETEDLHKLNVKKDSDEIK*SFEK>RQEK-NEKIAFLEKELLGEK>TWQLQGEVTAQKRPENSLP |
|
Parental | EETLHFDHAVRMAPVITEETTLQLEDIIKQRIRDQAWDDVVRKEKPKEDAYEYKKQLTLDHEKSKLSLAE |
| EET.HFDHAVR.APVITEETTLQLEDIIKQRI.D.AW.DVV.K.KPKED.YE.KK.L.LDHEK.KLSLAE |
Retrocopy | EETPHFDHAVRLAPVITEETTLQLEDIIKQRIKDRAWGDVVHK*KPKEDTYECKKHLILDHEKRKLSLAE |
|
Parental | IYEQEYIKLNQQKTTEEENPEHVEIQKMMDLLFLKLDALSNFHFIPKPPAPEIKVVSNLPAIAMEEVAPV |
| IYEQEYIKL.QQKTTEEENPEHVEIQKMMDLLFLKLDALSNFHFIPKP.APEIKVVSNLP.IA.EEVAPV |
Retrocopy | IYEQEYIKLSQQKTTEEENPEHVEIQKMMDLLFLKLDALSNFHFIPKPSAPEIKVVSNLPTIAVEEVAPV |
|
Parental | SVSDETLLAPEEIKEKNKAGDIKTAAEKTATDKKRERRKKKYQKHMKIKAKEKQSKLLEKSCPDQAGKYT |
| SVSDETLLAPEEIKE.NKAGDIKTAAEK.ATD.K.ERRKKKYQKHM.I..KE.QSKLLEK..PDQAGKYT |
Retrocopy | SVSDETLLAPEEIKEINKAGDIKTAAEKPATDEK*ERRKKKYQKHMNINSKETQSKLLEKCGPDQAGKYT |
|
Parental | KALASNKLKQLTKAGKAXXXXDDGKDKALKSSQAFFSKLQDQVKMQIHDKKKAENRNKK |
| KALASNKLKQLTKAGKA....DDGKDK.LKSSQAFFSKLQDQVK.QIHDKKK.E.R..K |
Retrocopy | KALASNKLKQLTKAGKASLLKDDGKDKTLKSSQAFFSKLQDQVKKQIHDKKKTEIRKHK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1387 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.