RetrogeneDB ID: | retro_etel_1400 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_259539:0..682(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ETF1 | ||
Ensembl ID: | ENSETEG00000007362 | ||
Aliases: | None | ||
Description: | eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:3477] |
Percent Identity: | 96.49 % |
Parental protein coverage: | 52.06 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LTALLSDDSKF-GFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK |
LTALLSDDSKF..FIV.DGSGALFGTLQG.TREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK | |
Retrocopy | LTALLSDDSKF>SFIVVDGSGALFGTLQGSTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK |
Parental | VAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEV |
VAETAVQLFISGDKVNVAGL.LAGSADFKTELSQSDMFDQRLQSKVLKLVDISY.GENGFNQAIELSTEV | |
Retrocopy | VAETAVQLFISGDKVNVAGLILAGSADFKTELSQSDMFDQRLQSKVLKLVDISYSGENGFNQAIELSTEV |
Parental | LSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKIL |
LSNV.FIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKIL | |
Retrocopy | LSNVRFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKIL |
Parental | YLTPEQEKDKSHFTDKET |
YLT.EQEKDKSHFTDKET | |
Retrocopy | YLTAEQEKDKSHFTDKET |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000001282 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006776 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000010830 | 3 retrocopies | |
Equus caballus | ENSECAG00000013041 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007362 | 2 retrocopies |
retro_etel_1237, retro_etel_1400 ,
|
Gorilla gorilla | ENSGGOG00000000657 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000005871 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000009338 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006650 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000019450 | 1 retrocopy |