RetrogeneDB ID: | retro_etel_1460 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_269617:10627..11096(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DCUN1D1 | ||
Ensembl ID: | ENSETEG00000000166 | ||
Aliases: | None | ||
Description: | DCN1, defective in cullin neddylation 1, domain containing 1 [Source:HGNC Symbol;Acc:18184] |
Percent Identity: | 64.78 % |
Parental protein coverage: | 59.3 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | NKLKSSQKDKVRQFMIFTQSSE----KTAVSCLSQNDWKLDVATDNF-FQNPELYIRESVKGSLDRKKLE |
NKLKS.Q.......M....S.E......AVS.LSQNDWKLD...D.F.F......I.E.VKGSLDRKKLE | |
Retrocopy | NKLKSTQDKISLFLMFTQSSGEGGWGRPAVSYLSQNDWKLDASKDHF<FPKIMNFI*EIVKGSLDRKKLE |
Parental | QLYNRYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFSKQEFLDGMTELGCDSIE- |
QLYN.YKDPQD.NKIG.DGIQQF...LAL..A.I...IIAWK.RAATQ.EFSKQEF.DGMTEL.C...E. | |
Retrocopy | QLYNGYKDPQDGNKIGVDGIQQFGGALALESANIRMRIIAWKSRAATQ*EFSKQEFMDGMTELACGNTE< |
Parental | KLKAQIPKMEQELKEPGRF |
K.KAQIPKM.QELKEPG.F | |
Retrocopy | KPKAQIPKMGQELKEPG*F |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013358 | 14 retrocopies | |
Callithrix jacchus | ENSCJAG00000005148 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000022086 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019073 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000000166 | 1 retrocopy |
retro_etel_1460 ,
|
Homo sapiens | ENSG00000043093 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010767 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010552 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002369 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027708 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005983 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000658 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015661 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012276 | 1 retrocopy |