RetrogeneDB ID: | retro_etel_1464 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_270070:2270..2577(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRELID2 | ||
Ensembl ID: | ENSETEG00000005000 | ||
Aliases: | None | ||
Description: | PRELI domain containing 2 [Source:HGNC Symbol;Acc:28306] |
Percent Identity: | 71.43 % |
Parental protein coverage: | 54.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | KVNILKIPDIQLEEESWLNLQERSMAIQSHCL-TWTQYASMKEESVFRESVENP-NWTEFIQRGRISITG |
K...LKI...QL.EE.W...Q.RS..IQ.H.L..W.QYAS.KEE.VF..S.ENP.NWT.FIQRGRISITG | |
Retrocopy | KMSNLKILQTQLQEEAWFSIQDRSWTIQQHSL<SWVQYASKKEEAVFPQSMENP<NWTQFIQRGRISITG |
Parental | AGFLNCILETFASAFLKQGAQKGIKIMEMLLKEQC |
AGFLNCILETF.SAFL.QGAQKG..IMEMLLKEQC | |
Retrocopy | AGFLNCILETFVSAFLEQGAQKGMRIMEMLLKEQC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000001222 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000005000 | 2 retrocopies |
retro_etel_1464 , retro_etel_1676,
|
Homo sapiens | ENSG00000186314 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013588 | 1 retrocopy | |
Mus musculus | ENSMUSG00000056671 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009800 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010025 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017368 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016708 | 1 retrocopy |