RetrogeneDB ID: | retro_etel_148 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_2635:159478..160041(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP4R2 | ||
Ensembl ID: | ENSETEG00000019946 | ||
Aliases: | None | ||
Description: | protein phosphatase 4, regulatory subunit 2 [Source:HGNC Symbol;Acc:18296] |
Percent Identity: | 68.06 % |
Parental protein coverage: | 68.1 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LSVPMTTNGLPENTDSKEANVQQSEDKHHSEALSSESE-GTAVSPMKNKHPGEDAVEAEGHEVKRLRFDK |
LS.PMTT.GLPEN.DSKEA..Q..EDKHH.....SESE....VSPMK.KH..EDA.EAE.HEVK..RFD. | |
Retrocopy | LSAPMTTYGLPENPDSKEATLQKKEDKHHNGTPTSESE<SASVSPMKKKHLDEDA-EAERHEVKKRRFDE |
Parental | ESEVRETASQTPSSAASPVVVEEKEAAASSPDKDEESSSAEQHCTEEEEEEEEEEEEESFMTSREMVPER |
ESE.RE..S.T.SS.ASPV.VE..EA..SS.DKD.ESS......TE..E.E.E.EEE..FMTSREMVPER | |
Retrocopy | ESE*RESQSAT-SSVASPVSVEDTEALSSSLDKDKESSCSRRRWTEAQEDEDE*EEEAPFMTSREMVPER |
Parental | KNQEKESDDALTVNEETSEENHQMEESDVSQAENDLHAAGSEDTGPVSSDS |
KNQEKESDD.LT.NEETS.ENHQMEE.D.SQA..DLH.AGSEDTGPV...S | |
Retrocopy | KNQEKESDDTLTMNEETSTENHQMEECDLSQALKDLHSAGSEDTGPVRNGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007954 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000019946 | 2 retrocopies |
retro_etel_1238, retro_etel_148 ,
|
Homo sapiens | ENSG00000163605 | 6 retrocopies | |
Loxodonta africana | ENSLAFG00000000513 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016959 | 1 retrocopy | |
Mus musculus | ENSMUSG00000052144 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006235 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015108 | 5 retrocopies |