RetrogeneDB ID: | retro_etel_1491 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_274114:10281..10837(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FKBP3 | ||
Ensembl ID: | ENSETEG00000003358 | ||
Aliases: | None | ||
Description: | FK506 binding protein 3, 25kDa [Source:HGNC Symbol;Acc:3719] |
Percent Identity: | 73.4 % |
Parental protein coverage: | 87.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LAEHKLLGNIKNVAKTANKXXXXXXXXXXXXXXRFKGTESINKVCEQVKNVKVTDDKPKENKSEETLEEG |
LAEHKLLGNIKNVAKTAN................FKGT.SIN.VCEQVKNVKVTDDK.KENKSEETLEEG | |
Retrocopy | LAEHKLLGNIKNVAKTANQDHLVTAYNHLFETKHFKGTKSINQVCEQVKNVKVTDDKRKENKSEETLEEG |
Parental | PPKYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGXXE |
P.KYT.SVL.KGD.T..PKKGDVVHCW.TGTLQDGT...T.IQTSAKKKKNAKPLSFKVGVG.V.RG... | |
Retrocopy | PSKYTNSVLNKGDRTSVPKKGDVVHCWCTGTLQDGTALGTHIQTSAKKKKNAKPLSFKVGVGQVFRGWDG |
Parental | A-LLTIIKGEKARL-GIEPEWAYGKKGQPDALIPPNAKLIFEVELVDI |
A..L...KG.KA....IEPEW.YGKK.QPDA.IPP.AK.IFEVELVDI | |
Retrocopy | A<ILRMSKGAKAQA<DIEPEWSYGKKAQPDAQIPPSAKRIFEVELVDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014018 | 4 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000000189 | 1 retrocopy | |
Equus caballus | ENSECAG00000018299 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000003358 | 8 retrocopies |
retro_etel_1114, retro_etel_1484, retro_etel_1491 , retro_etel_1499, retro_etel_1774, retro_etel_2130, retro_etel_2200, retro_etel_997,
|
Echinops telfairi | ENSETEG00000007454 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018432 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018990 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000003572 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004962 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007352 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003012 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000011316 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000006017 | 13 retrocopies | |
Tarsius syrichta | ENSTSYG00000002125 | 2 retrocopies |