RetrogeneDB ID: | retro_etel_1516 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_276670:3430..3867(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAPZA2 | ||
Ensembl ID: | ENSETEG00000019711 | ||
Aliases: | None | ||
Description: | capping protein (actin filament) muscle Z-line, alpha 2 [Source:HGNC Symbol;Acc:1490] |
Percent Identity: | 69.8 % |
Parental protein coverage: | 51.75 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | DQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAAESWRTSVETALRAYVKEHYPNGVC |
.QV.ITEHGDLGNGKFL...NR..FKFDHLRKE...PRPY.AENA.ES.RTS.ET.LR.YVKEHYPNG.. | |
Retrocopy | NQVVITEHGDLGNGKFLESPNRMFFKFDHLRKETIVPRPYKAENAVES*RTSLETSLRLYVKEHYPNGFF |
Parental | TVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFTITPSTTQVVGILKIQVHYYE-DGNVQLVSHK |
...G.K.........CI.SHQFQAK.FWNG.W.SEWK.TITPST.Q.V.I.KIQVHYYE..GNVQLV.HK | |
Retrocopy | PLHGNKRQANKK--PCI*SHQFQAKHFWNGHWQSEWKCTITPSTPQMVFIWKIQVHYYE<SGNVQLVTHK |
Parental | DIQDSLTVS |
DIQD.LT.S | |
Retrocopy | DIQDPLTMS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004925 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000007677 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000005771 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000016226 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009063 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000019711 | 3 retrocopies |
retro_etel_1516 , retro_etel_2020, retro_etel_442,
|
Gorilla gorilla | ENSGGOG00000012158 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000000707 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007910 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003591 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017933 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000026942 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024828 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012657 | 2 retrocopies |