RetrogeneDB ID: | retro_etel_1520 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_276777:8621..8999(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBA52 | ||
Ensembl ID: | ENSETEG00000003392 | ||
Aliases: | None | ||
Description: | ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:HGNC Symbol;Acc:12458] |
Percent Identity: | 80.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHL |
MQIFVKTL.GKT.TLE.EP.DTIE.VK.KIQDKEGIPPDQQRL.FAGKQL.DGRTLSDYNIQK..T.LHL | |
Retrocopy | MQIFVKTLMGKTTTLESEPRDTIEKVKVKIQDKEGIPPDQQRLTFAGKQLVDGRTLSDYNIQKDPT<LHL |
Parental | VLRLRGGIIEPSLRQL-AQKYNCDKMICRKCYARLH-PRAVNCRKKKCGHTNNLRPKKKVK |
VLRL.GGI.EPSLRQL.AQKYNC...ICRKC.A..H.P.AV.C..KKCGHTN.LRPKKKVK | |
Retrocopy | VLRLHGGIMEPSLRQL<AQKYNCHTTICRKCFAHRH<PHAVHC-CKKCGHTNSLRPKKKVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |