RetrogeneDB ID: | retro_etel_1573 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_279523:57704..58551(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000004633 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000006890 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.2 % |
Parental protein coverage: | 54.84 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | GNDTKKFK-GDSRSSGAPSRVVHVRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANT |
GNDTKK.K.GDSRS..APSRVVHV.KLPGDVT.GEVISLGLPF..VTNLLMLK.KNQAF.EMNTEEA.NT | |
Retrocopy | GNDTKKLK<GDSRSLDAPSRVVHVCKLPGDVT*GEVISLGLPFREVTNLLMLKVKNQAFTEMNTEEATNT |
Parental | MVNYYASVAAMLRGQPIYIQFSNHKELKTDGSPNQARAQAALQAVNSVQSGSLALAAS-AAAVDAGMAVA |
MVNYY.SVAAML.GQPIYIQFSNHKELKTDGSPN..RA.AALQA.N.VQSGSLALAAS.AAAVDA.M.VA | |
Retrocopy | MVNYYTSVAAMLHGQPIYIQFSNHKELKTDGSPNHVRA*AALQAINLVQSGSLALAAS>AAAVDARMSVA |
Parental | GQSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAEPVSAQHAKLSLDGQNIYN |
GQSPVLRV.VENLFYPVTLDVLHQIFSKFGTVLKI.TFTKNNQFQALLQYA.PVSAQHAKLSL.GQNIYN | |
Retrocopy | GQSPVLRVTVENLFYPVTLDVLHQIFSKFGTVLKIVTFTKNNQFQALLQYA*PVSAQHAKLSLHGQNIYN |
Parental | ACCTLRIDFSKLTSLNVKYNNDKSRDYTRP-DLPSGDS-QPSLDQTMAAAFGAPGIISASPYAGAGFPPT |
ACCTLRIDFSKLTSLNV.YNN.KSRDY.RP.DLPSGDS.QPS.DQTMAAAFGAPGIISASPYAGAGFPPT | |
Retrocopy | ACCTLRIDFSKLTSLNVMYNNEKSRDYSRP<DLPSGDS<QPSPDQTMAAAFGAPGIISASPYAGAGFPPT |
Parental | FAIPQAA |
FAIPQAA | |
Retrocopy | FAIPQAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020162 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000007421 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000000882 | 1 retrocopy | |
Equus caballus | ENSECAG00000018845 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000003779 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006890 | 1 retrocopy |
retro_etel_1573 ,
|
Homo sapiens | ENSG00000011304 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005090 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006710 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000003320 | 1 retrocopy | |
Mus musculus | ENSMUSG00000006498 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000864 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000009289 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000010165 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000010448 | 2 retrocopies |