RetrogeneDB ID: | retro_etel_1583 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_280315:188..866(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000011253 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000002717 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.33 % |
Parental protein coverage: | 66.1 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 6 |
Parental | TVDKHSVE-VTNCFSVPHNES-EDEVAVDMEFAKNMYELHKK-VSPNELILGWYATGHDITEHSVLIHEY |
TV.KHSVE.V.N.F.VPHNE...DE.AV.M..AKNMYELHKK..SPNELILGWY.TGHDITE.SVL.H.Y | |
Retrocopy | TVEKHSVE<VINGF*VPHNEA<LDEAAVVMQSAKNMYELHKK>ISPNELILGWYTTGHDITELSVLFH*Y |
Parental | YSREAPNPIHLTVDTSLQNGRMSIKAYMSTLMGVPGRT-MGVMFTPLTVRYAY-YDTERIGVDLIMKTCF |
Y....P.P....VDTSL.....SI.A..STLMG..GRT.M...FT.LT..YAY.Y.TE.I.VDLI....F | |
Retrocopy | YN---PIPL--PVDTSLHK---SIEASVSTLMGICGRT<MMLVFTHLTRKYAY>YNTEHIRVDLIVEPHF |
Parental | SSNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDD-FETM |
S....I.LSSDL..V.GAS..IQ.ALST.LQYAEDVLSGKVSADNTVG.F..SLVNQVPK..P.D.FE.M | |
Retrocopy | SLHGMICLSSDLERVRGASVHIQQALSTLLQYAEDVLSGKVSADNTVGSFSISLVNQVPKLMPHD>FEIM |
Parental | LNSNINDLLMVTYLANLTQSQIALNEKLVN |
LNSNIN.LLMVTYL.NL..SQIALNEKLVN | |
Retrocopy | LNSNINGLLMVTYLVNLM*SQIALNEKLVN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004861 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000006884 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000011903 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000001226 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000002717 | 2 retrocopies |
retro_etel_1583 , retro_etel_35,
|
Homo sapiens | ENSG00000175390 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000011702 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000000825 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015010 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004225 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003220 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000003512 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003326 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000015764 | 1 retrocopy |