>retro_etel_1585
ACCCACGTGATGAATCTCCTGCGAGAGCAGAGCCGGACCAGGCCCATCTCCCCGAAGGAGATCGAGCGGATGGTCAGTAT
CATCCACCGCAAGTTCAGCTCCATCCAGATGCAGCTCAAGCAGAGCACGTGTGAGGCGGTCATGATCCTGCGTTCCCGGT
TCCTGGATGCGCGGCGGAAGAGACGGAATTTCAACAAGCAAGCTACGGAAATCCTGAATGAATATTTCTATTCCCATCTC
AGCAACCCTTACCCCAGTGAGGAAGCCAAAGAGGAGTTAGCCAAGAAGTGTGGCATCACAGTCTCCCAGGTATCAAACTG
GTTTGGAAATAAGCGAATCCGGTACAAGAAGAACATAGGTAAATTCCAAGAGGAAGCCAATATTTATGCTGCCAAAACGG
CTGTCACTGCTACCAATGTGTCAGCCCATGGAAGCCAAGCTAACTCACCCTCAACTCCCAACTCAGCTGGTTCTTCCAGT
TCTTTTAACATGTCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAATGGGGATTCTTACCAAGGGGCCCAGGT
TGGAGCCAACGTGCAATCACAG
ORF - retro_etel_1585 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
72.68 % |
Parental protein coverage: |
63.04 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | THVTNLLREQSRVRPVSPKEMEHMVGVIHGKFRAIQMQLKQSTCEAVMTLRSRFLDARRKRRNFSKQATE |
| THV.NLLREQSR.RP.SPKE.E.MV..IH.KF..IQMQLKQSTCEAVM.LRSRFLDARRKRRNF.KQATE |
Retrocopy | THVMNLLREQSRTRPISPKEIERMVSIIHRKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFNKQATE |
|
Parental | VLNEYFYSHLSNPYPSEEAKEELARKGGITVSQVSNWFGNKRIRYKKNMGKFQEEANVYVSKTSVDATKV |
| .LNEYFYSHLSNPYPSEEAKEELA.K.GITVSQVSNWFGNKRIRYKKN.GKFQEEAN.Y..KT.V.AT.V |
Retrocopy | ILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEANIYAAKTAVTATNV |
|
Parental | GSPGHQASCPLTP-SSGSSSTFSLTCPEDASVSLQALASD--QPFQMGPRSQSQ |
| ...G.QA..P.TP.S.GSSS.F......D...S.Q.L..D..Q..Q.G...QSQ |
Retrocopy | SAHGSQANSPSTPNSAGSSSSFNMSNSGDLFMSVQSLNGDSYQGAQVGANVQSQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1585 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.