>retro_etel_1596
GTTGAAATTGAGGTGGAGATTGCCGAAGACACAATTGAAGTGGAAGGTGAAGGCGTTGAAACATTGGAGGAAGTGGCTTC
GGCCAAGGAATCTGTAAAGTACACTCAAAGCACAGGGTCCTCCGATGATTCCGCTTTAGCTCTTTTGGCAGATATTACCA
GCAAGTATCATCAGGGTGATAGAAAAGGGCATCTTAAAGAAGGTGGATGTGCATCTGACCCCACAATCAAACAGGAGCAC
ATGAAATCACACTCCACGGAGAGTTTCAAGTGTGCAATATGCAATGAAAGGTATCTGTGGGAGAGCGCATGGAAACAGCA
CCTCAATTGCTACCACCTGGAAGAAGGTAGTGCCAGTAAGAAGCAAAGAACTGGGGAAAAATTCCTATTTGTCAGTATTG
TGAGAAACAGTTTGACCACTTTGGACACTTTAAAGAGCATTTTCAAAAACATACAGGTGAGAAACCCTTTGAATGTTCAA
ATTGTCATGAGCGATTTGCTAGAAATAGCACACTGAAATGTCACCTGACAGCATGCCAAACTGGAGTAGGGGCAAAAAAG
GGAAGAAAGAAGCTTTATGAATGTCAGGTTTGTAACAATGTGTTTAACAGCTGGAACCAGTTTAAAGATCACTTAGTAAT
TCACACTGGAGATAAACCCAACCATTGTACTCTATGTGATTTGTGGTTTATGCAAGGAAATGAATTAAGGAGACATCTCA
ATGATGCCCATAACATTTCTGAACATCTAATAACTGAAGAAATTCTTCCAGTAGAAACACACTTGCAAGCTGAACCTGTA
ACATCAATGATAATTATAGAACAAGTTGGGAAGGTACATGTGCTACCATTGCTTCAGGTCCAAGTGGATTCAGCACAAGT
AACTGTGGAACAGGTCCATCCAGATCTGCTCCAGGACAGTCAAATGCACGATTCACATATCAGTGAGCTTCCAGAGCAGG
TCCAGGTGAGT
ORF - retro_etel_1596 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
92.31 % |
Parental protein coverage: |
64.99 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | VEIEVEIAEDTIEVEGEEFDTFEEVAWAKQSIKYIQSTGSSDDSALALLADITSKYRQGDRKGHLKEGGC |
| VEIEVEIAEDTIEVEGE...T.EEVA.AK.S.KY.QSTGSSDDSALALLADITSKY.QGDRKGHLKEGGC |
Retrocopy | VEIEVEIAEDTIEVEGEGVETLEEVASAKESVKYTQSTGSSDDSALALLADITSKYHQGDRKGHLKEGGC |
|
Parental | ASDPTIKQEHMKSHSTESFKCEICNKRYLRESAWKQHLNCYHLEEGGASKKQRTGKK-IHICQYCEKQFD |
| ASDPTIKQEHMKSHSTESFKC.ICN.RYL.ESAWKQHLNCYHLEEG.ASKKQRTG.K.I.ICQYCEKQFD |
Retrocopy | ASDPTIKQEHMKSHSTESFKCAICNERYLWESAWKQHLNCYHLEEGSASKKQRTGEK<IPICQYCEKQFD |
|
Parental | HFGHFKEHLRKHTGEKPFECSNCHER-ARNSTLKCHLTACQTGVGAKKGRKKLYECQVCNSVFNSWDQFK |
| HFGHFKEH..KHTGEKPFECSNCHER.ARNSTLKCHLTACQTGVGAKKGRKKLYECQVCN.VFNSW.QFK |
Retrocopy | HFGHFKEHFQKHTGEKPFECSNCHERFARNSTLKCHLTACQTGVGAKKGRKKLYECQVCNNVFNSWNQFK |
|
Parental | DHLVIHTGDKPNHCTLCDLWFMQGNELRRHLNDAHNISERLITEEILSVETHLQTEPVTSMTIIEQVGKV |
| DHLVIHTGDKPNHCTLCDLWFMQGNELRRHLNDAHNISE.LITEEIL.VETHLQ.EPVTSM.IIEQVGKV |
Retrocopy | DHLVIHTGDKPNHCTLCDLWFMQGNELRRHLNDAHNISEHLITEEILPVETHLQAEPVTSMIIIEQVGKV |
|
Parental | HVLPLLQVQVDSAQVTVEQVHPDLLQDSQMHDSHISELPEQVQVS |
| HVLPLLQVQVDSAQVTVEQVHPDLLQDSQMHDSHISELPEQVQVS |
Retrocopy | HVLPLLQVQVDSAQVTVEQVHPDLLQDSQMHDSHISELPEQVQVS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1596 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.