RetrogeneDB ID: | retro_etel_1600 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_282154:12702..13140(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000004438 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D1 | ||
Ensembl ID: | ENSETEG00000002280 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2D 1 [Source:HGNC Symbol;Acc:12474] |
Percent Identity: | 73.29 % |
Parental protein coverage: | 99.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT |
MALKRIQ.ELS...RDPPA.CSAGPVGD..FHWQ.TIMGP..S.YQGGVFFL...FP.DYP..PPKI.FT | |
Retrocopy | MALKRIQRELSGMIRDPPAQCSAGPVGDNMFHWQGTIMGPTNSPYQGGVFFLAISFPADYPYHPPKITFT |
Parental | TKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE |
T.IYHPNI.....ICLDIL.S.WSPALT.SKVLLSICSLLCDPNPDDPLVP.IA.IYK.D.E.Y...A.. | |
Retrocopy | TLIYHPNISKRDNICLDILNSEWSPALTISKVLLSICSLLCDPNPDDPLVPSIAKIYKNDREMYDKLAKK |
Parental | WTQKYA |
.T.KYA | |
Retrocopy | YTHKYA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |