RetrogeneDB ID: | retro_etel_1613 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_282929:10895..11597(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRPS2 | ||
Ensembl ID: | ENSETEG00000005166 | ||
Aliases: | None | ||
Description: | phosphoribosyl pyrophosphate synthetase 2 [Source:HGNC Symbol;Acc:9465] |
Percent Identity: | 91.45 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPNVVLFSGSSHQELSQRVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGCGEINDNIMEL |
MPN...FSGSSHQ.LSQ..ADRLGLELGKVVTKKFSNQET.VEIGESVRGEDVYI.QSGCGEINDN.MEL | |
Retrocopy | MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMEL |
Parental | LIMINACKIASASSVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFNI |
LIMINACKIASAS.VTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFF.I | |
Retrocopy | LIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDI |
Parental | PVDNLYAEPVVLQWIKENIADWKECIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVDRMVLVGD |
PVDNLYAEP.VL.WI.ENI..W..C.IVSPDAGGAKRVTSIADRLNV.FALIHKERKKANEVDRMVLVGD | |
Retrocopy | PVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGD |
Parental | VKDRVAILVDDMADTCGTICHAAD |
VKDRVAILVDDMADTCGTICHAAD | |
Retrocopy | VKDRVAILVDDMADTCGTICHAAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000011662 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000003885 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000005166 | 2 retrocopies |
retro_etel_1613 , retro_etel_669,
|
Echinops telfairi | ENSETEG00000014736 | 1 retrocopy | |
Felis catus | ENSFCAG00000026323 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017334 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000016087 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000001197 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000020125 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000009452 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007710 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006056 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009917 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003226 | 1 retrocopy |