RetrogeneDB ID: | retro_etel_1643 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_284981:364..1009(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000006005 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.12 % |
Parental protein coverage: | 78.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EKLKEKVVKREDLFIVSKLWSTFFERPLVKEACRKTLNDLKLDYLDIYLIHWPQGLKPGKEILPKDEAGN |
EKLKEKVVK.EDLFIVSKLW..FFERPLVKEACRKTL.D.KLDYLDIYLIHWP.GLKPGKE.LPKDEA.N | |
Retrocopy | EKLKEKVVKHEDLFIVSKLWPPFFERPLVKEACRKTLQDRKLDYLDIYLIHWPRGLKPGKELLPKDEAAN |
Parental | LLCCKATFVDAWEAMEKLV-ERLVKAFGVSIFNHSQIERLWNKPGLKHKPVMNQVECHPYLTQEKLIQYC |
L.C.KATFVDAWEA.E.LV.E.LVKA.GVS.FNH..IERL.NKPGLKHKPV.NQVEC.P.LTQEKLIQY. | |
Retrocopy | LFCSKATFVDAWEATEELVDEGLVKAIGVSNFNHFRIERLLNKPGLKHKPVTNQVECPPCLTQEKLIQYW |
Parental | HSKGIAVTAYSPLGSPDRPWVQPEDPSLLEHPKIKEIAAKHNKTPAQVLIRFHIQRNVVVIPKSVTPKRI |
.SKGI.V.A.SPLGSPDRPWVQPEDPSLLEHPKIKE.AAKHN.TPAQVLIRF.IQRNVVVIPKS..PKRI | |
Retrocopy | QSKGITVPAHSPLGSPDRPWVQPEDPSLLEHPKIKELAAKHNITPAQVLIRFPIQRNVVVIPKSANPKRI |
Parental | VENFQ |
VENFQ | |
Retrocopy | VENFQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000166 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012250 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000004422 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006005 | 3 retrocopies |
retro_etel_1055, retro_etel_1643 , retro_etel_748,
|
Echinops telfairi | ENSETEG00000006450 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000009155 | 1 retrocopy | |
Homo sapiens | ENSG00000198074 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013098 | 2 retrocopies | |
Mus musculus | ENSMUSG00000029762 | 1 retrocopy | |
Mus musculus | ENSMUSG00000052131 | 1 retrocopy | |
Mus musculus | ENSMUSG00000061758 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013088 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018018 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019718 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000009734 | 3 retrocopies | |
Sorex araneus | ENSSARG00000001396 | 1 retrocopy |