RetrogeneDB ID: | retro_etel_1652 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_285288:7054..7624(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DCTN6 | ||
Ensembl ID: | ENSETEG00000012307 | ||
Aliases: | None | ||
Description: | dynactin 6 [Source:HGNC Symbol;Acc:16964] |
Percent Identity: | 93.16 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAEKTQKSVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAHPDNI |
MAEKT.KSVK.APGAVVCVESEI.GDV.IGPRTVIHPKARIIAEAGPIVIGEGNLIEE.ALIINAHPDNI | |
Retrocopy | MAEKTPKSVKLAPGAVVCVESEIQGDVAIGPRTVIHPKARIIAEAGPIVIGEGNLIEERALIINAHPDNI |
Parental | TPDAGDVEPKPMVIGTNNVFEVGCYSQAMKMGDNNVIE-KAYVGRNVILTSGCIIGACCSLNTFEVIPEN |
TPDAGDVEPKPM.IGTNNVFEVGCY..AMKMG.NNVIE.KAYVG.NVILTSG.IIGACCSLNTFEVIPEN | |
Retrocopy | TPDAGDVEPKPMIIGTNNVFEVGCYFHAMKMGVNNVIESKAYVGTNVILTSGYIIGACCSLNTFEVIPEN |
Parental | TVIYGADCLRRVQTERPQPQTLQLDFLMKILPNYHHLKKTTKGSSTPVKN |
TVI.GADCLRRVQTERPQPQTLQLDFLMKILPNYHHLKKTTKGSSTPVKN | |
Retrocopy | TVIDGADCLRRVQTERPQPQTLQLDFLMKILPNYHHLKKTTKGSSTPVKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001497 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000006518 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000002554 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000011021 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000012307 | 2 retrocopies |
retro_etel_1571, retro_etel_1652 ,
|
Felis catus | ENSFCAG00000000133 | 1 retrocopy | |
Homo sapiens | ENSG00000104671 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013074 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000028330 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000013735 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019010 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011906 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010968 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000005061 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000020134 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013306 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012439 | 1 retrocopy |