RetrogeneDB ID:

retro_etel_1656

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_285837:84067..84429(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSETEG00000010851
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSETEG00000007762
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_etel_1656
CTAAAGAATGGCGAGACATACGACGCTCCCTGGTGAGCTGTGGCAGCTGCATGAACATCAGCCTGCGGGAGGGCATCTGC
ACATCCCAGGATGGAGACAAGTTCTAGCAAATGCCAGCGTGCTCTAGCTGTGGCAGCACCATCAAGTACCTGTGCATCCC
TGACGAGATCATCGATATGGTCAAGGACGAGGTGGTGGCCAAGGGCCACGGCCAGGCTGGCCGACAACAGCAGAAGCAGC
GGAAAGGCTGTGGCATGGCTGGTGTTGGCCGAGGTGTGTTTGGTGGCCGTGGCCTTGGCAGGATCCCCGGCACAGGCAGG
GGCCAACCGGGGAAGAAGCCAGGCCAACAGGTAGGCAAGCAG

ORF - retro_etel_1656 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.59 %
Parental protein coverage: 97.58 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalLKNGETYNG-HLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKDEVVAKG
LKNGETY....LVSC...MNI.LRE.ICTS.DGDKF..MP.C...GSTIKYL.IPDEIIDMVKDEVVAKG
RetrocopyLKNGETYDA<SLVSCGSCMNISLREGICTSQDGDKF*QMPACSSCGSTIKYLCIPDEIIDMVKDEVVAKG
ParentalRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQQEKKPGRQAGKQ
.G..G.QQQKQ.KG.GM.G.GRGVFGGRG.G.IPGTGRGQ..KKPG.Q.GKQ
RetrocopyHGQAGRQQQKQRKGCGMAGVGRGVFGGRGLGRIPGTGRGQPGKKPGQQVGKQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1656 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000149001 retrocopy
Echinops telfairi ENSETEG00000007762 2 retrocopies
retro_etel_1656 , retro_etel_51,
Latimeria chalumnae ENSLACG000000158611 retrocopy
Myotis lucifugus ENSMLUG000000040101 retrocopy



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