RetrogeneDB ID:

retro_etel_1659

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_286342:102541..103114(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TTC1
Ensembl ID:ENSETEG00000019397
Aliases:None
Description:tetratricopeptide repeat domain 1 [Source:HGNC Symbol;Acc:12391]


Retrocopy-Parental alignment summary:






>retro_etel_1659
AAGGACATGTCTGATGAAGAGAAACAGAAAAGACGAGAGGAGAGCACCCGGCTGAAGGGAGCGGGAAACGAACAGTTTAA
GAAAGGAGATTATGTTGAAGCAGAAAGCTCTTACAGTCGAGCCCTTCACACGTGTCCGGCCTGCTTCCAGACAGACAGGT
CTGTTCTGTTTTCAAATAGAGCTGCTGCAAGGATGAAACAGGACAAGAAGGAGATGGCTCTCGGTGACTGCAGCAAAGCA
ATTCAGTTAAATCCCAGCTACATTAGGGCAATACTGAGGAGAGCCGAGTTGTACGAGAAGACAGACAAACTGGATGAAGC
CTTGGAAGACTATAAATCTATATTAGAAAAAGATCCATCCATACATCAAGCAAGAGAAGCTTGTATGAGATTGCCTAAAC
AAATTGAAGAACGGAATGAAAAGCTAAAGGAAGAGATGTTAGGTAAACTAAAAGATCTTGGGAACTTGGTTCTCCGGCCT
TTTGGACTCTCCACAGAAAACTTCCAGATCAAGCAGGATTCCTCTACTGGCTCATATTCGGTCAATTTTGTTCAAAATCG
AAATAACAACAGA

ORF - retro_etel_1659 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.34 %
Parental protein coverage: 65.07 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalKDMSDEEKQKRREESTRLKGAGNEQFKKGDYVEAESSYSRALHTCPACFQTDRSVLFSNRAAARMKQDKK
KDMSDEEKQKRREESTRLKGAGNEQFKKGDYVEAESSYSRALHTCPACFQTDRSVLFSNRAAARMKQDKK
RetrocopyKDMSDEEKQKRREESTRLKGAGNEQFKKGDYVEAESSYSRALHTCPACFQTDRSVLFSNRAAARMKQDKK
ParentalEMALGDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSIHQAREACMRLPKQIEERNE
EMALGDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSIHQAREACMRLPKQIEERNE
RetrocopyEMALGDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSIHQAREACMRLPKQIEERNE
ParentalKLKEEMLGKLKDLGNLYLRPFGLST-NFPIEQDSSTGSYSVNFVHNQNTNR
KLKEEMLGKLKDLGNL.LRPFGLST.NF.I.QDSSTGSYSVNFV.N.N.NR
RetrocopyKLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSVNFVQNRNNNR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1659 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species Parental gene accession Retrocopies number
Echinops telfairi ENSETEG00000019397 1 retrocopy
retro_etel_1659 ,
Myotis lucifugus ENSMLUG000000030572 retrocopies
Otolemur garnettii ENSOGAG000000163421 retrocopy
Tupaia belangeri ENSTBEG000000046411 retrocopy
Vicugna pacos ENSVPAG000000120311 retrocopy



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