>retro_etel_1666
AGGGACACACTACAACCAAAAATCAAATTTGTAATCGTGCTCCAGATTGAGGAGCCCAAGGTGAAAATGGATTTATAAGT
AACCATGCCACACAGCTATGCAGGCCTACAGCTGTTTGGATGGTCATCTGTGCTTGACAGACAACTTCAGTTGCTCTCAA
CAAAAATCTCACTTCTTACATACAGACTTTTGATCCAGGGAAGATCTATGTGTGTGTGCAGCAATCCAGTGGATACAGGA
TAATAGCTCATCTAAGTATTGAACAAAATGCTGACGTGTGATCCATCTGCACAAGTAAAGACAGTTAAGAACACTTTCCT
CCAAATGTGGAGTTACTGCTACCGGGATATAAGGAAAAATATTTTGGATTCTGGAAAAAAGTTAGATATGACTGGGTTTT
GCATGATAGGAAAGCCTGGCATAATCTGTGTAGAGGGCTTCAAGGAG
ORF - retro_etel_1666 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
64.56 % |
Parental protein coverage: |
53.55 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | RETPPPKIEFVVTLQIEEPKVEIYL-PTMRHSHPSVALQLFGWSSALDRHQQLL-LNKSLTSYREMFDP- |
| R.T..PKI.FV..LQIEEPKV...L..TM.HS.....LQLFGWSS.LDR..QLL.LNK.LTSY...FDP. |
Retrocopy | RDTLQPKIKFVIVLQIEEPKVKMDL*VTMPHSY--AGLQLFGWSSVLDRQLQLL<LNKNLTSYIQTFDP< |
|
Parental | RE-IHVCAAIQWIQDNSASY-TLNKKLMYELSAQVKPVKNTLLT-WVYCHAYQQDLRKKILDIGKKLDVT |
| RE...VCAAIQWIQDNS.S...LNK.L....SAQVK.VKNT.L..W.YC.....D.RK.ILD.GKKLD.T |
Retrocopy | REDLCVCAAIQWIQDNSSSK<VLNKMLTCDPSAQVKTVKNTFLQMWSYCY---RDIRKNILDSGKKLDMT |
|
Parental | GLCM-GQPGIICAEGFKE |
| G.CM.G.PGIIC.EGFKE |
Retrocopy | GFCMIGKPGIICVEGFKE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1666 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.