RetrogeneDB ID: | retro_etel_1669 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_286652:1590..2243(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000001934 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000015680 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.65 % |
Parental protein coverage: | 56.4 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SKTQVTMQYKKDQGAVLPIRVHEIVISVQHDEDVSLHEMREALKEKVIEVVVPTVFLDENIIYHLQPSGR |
S....T.......GAVLPIR.H.IVISVQHD.DVSL.EMREALKEKVI.VVVP....DE.IIYHLQPSGR | |
Retrocopy | SQWHLTLVTPRF*GAVLPIRIHKIVISVQHDKDVSLDEMREALKEKVIKVVVPAMYFDEDIIYHLQPSGR |
Parental | FVTG-GPQA--STGMSGRKIIEDTYGGWGAHGGGAFSGKDCTKVDRSAAYAARWVAKSLIDRDLCRRVLV |
FV.G.GP....STG.SGRKII.DTYGGWGAHGGGAFSGKDCTKVDRSAAYAARWVAKSLI.RDLCRRVLV | |
Retrocopy | FVIG<GPSG*CSTGLSGRKIILDTYGGWGAHGGGAFSGKDCTKVDRSAAYAARWVAKSLIERDLCRRVLV |
Parental | QVNYAIGVAHPLSISISHYGTSEKSEQELVDIVKKNFDLRPEVIVRDLDLKKPIYQRTAVYGHFGREGFP |
QVN.AIGV.HPLSISI.HYGTSEKSEQELVD.VKKNFDLRPEVIVRDLDLKKPIYQRTA.YGHFGRE.F. | |
Retrocopy | QVNDAIGVSHPLSISIFHYGTSEKSEQELVDSVKKNFDLRPEVIVRDLDLKKPIYQRTAAYGHFGREDFA |
Parental | WEVPKKFKY |
WEVP.KFKY | |
Retrocopy | WEVPQKFKY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013959 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007634 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015680 | 4 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000003060 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000026925 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013520 | 2 retrocopies |