RetrogeneDB ID: | retro_etel_1697 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_288161:40160..40801(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000014092 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.95 % |
Parental protein coverage: | 64.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GWTSEDKQDVYYRLVQENGWHAHSAFKLLQLNEKFQLFEGVVQLVDLCAAPGS-NQVLSQKIVGGHVVAV |
G.TS..K.DVYYRL..ENGW.A..AFKLLQL.E.FQLF.GVV..VDLCAAPGS..QVLSQKI...H.VAV | |
Retrocopy | GRTSKEKRDVYYRLAKENGWCARNAFKLLQLDEEFQLFQGVVRAVDLCAAPGSWSQVLSQKITDRHMVAV |
Parental | DLQAVAPLPGMLQIQEDITQLSTAKEIIQQFED-PADLVVCD----VTGLHNVDGYLQAQLLPAALNIAT |
DLQA.APLPG.LQIQ.DI.QLSTAKEIIQ.FE..PADLVVCD....VTGLH.VD.Y.QAQLL.AALNIAT | |
Retrocopy | DLQAMAPLPGVLQIQGDINQLSTAKEIIQHFEGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIAT |
Parental | QVLKAGGCFVAKIFRDCDVTLLYSQLWV-FSNVVCAKPKSSGNSSIEVFT-VCQGYDPPEGFIPDLTKPL |
.VLK.GGCFV.KIFR..DVTLLY.QL...FS.VVCAK..SS.NSS.EVF..VCQG.DP..G.IPDLTKPL | |
Retrocopy | HVLKPGGCFVSKIFRGRDVTLLYRQLRLFFSKVVCAKTRSSRNSSMEVFM<VCQGHDPSAGIIPDLTKPL |
Parental | LYHTY |
L.HTY | |
Retrocopy | LDHTY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000031829 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000015339 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000001469 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000014092 | 3 retrocopies |
retro_etel_1697 , retro_etel_1803, retro_etel_1928,
|
Myotis lucifugus | ENSMLUG00000003977 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008009 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016174 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007091 | 1 retrocopy |