RetrogeneDB ID: | retro_etel_1709 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_288704:6674..6960(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBA52 | ||
Ensembl ID: | ENSETEG00000003392 | ||
Aliases: | None | ||
Description: | ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:HGNC Symbol;Acc:12458] |
Percent Identity: | 73.47 % |
Parental protein coverage: | 75. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI-PPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLH |
MQIFVKTLTGKTITLE.EPSD.IE.VK.KIQDKEGI.PPDQQRLIFAGKQLEDG.RTL.DYN.QKES.LH | |
Retrocopy | MQIFVKTLTGKTITLELEPSDAIESVKGKIQDKEGI<PPDQQRLIFAGKQLEDG<RTLYDYNTQKESPLH |
Parental | LVLRLRGGIIEPSLRQLAQKYNCDKMIC |
LVL.LRGG.......Q.A.K.......C | |
Retrocopy | LVLCLRGGC*FLLILQCAFKCPITAFLC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |