RetrogeneDB ID: | retro_etel_1722 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_290030:1940..2380(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EGLN1 | ||
Ensembl ID: | ENSETEG00000007202 | ||
Aliases: | None | ||
Description: | egl nine homolog 1 (C. elegans) [Source:HGNC Symbol;Acc:1232] |
Percent Identity: | 65.1 % |
Parental protein coverage: | 58.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ITWIEGKESGCETIGLLMSSMDDLIRHCNGKLGNYKINGRTKAMVACY-PGNGTGYVRHVDNPNGDGRCV |
ITWI.G.E.GC..I..L.S..D.L...C...LG.Y...GR.KAMVACY.PGNGTGYVRH.DNPN.DG.C. | |
Retrocopy | ITWIGGNEEGCKAISFL-SLVDRLVLYCRSQLGKYYVKGRPKAMVACY<PGNGTGYVRHGDNPNCDGSCI |
Parental | TCIYYLNKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDKD |
TCIYY.NK..DAK..GGILRIFPEGK...A..EP.FDRLLFFWSD..NP.EVQP.YA.RY...VWY.D.. | |
Retrocopy | TCIYYPNKNGDAKLQGGILRIFPEGKSFIAEVEPIFDRLLFFWSDCPNPREVQPSYAPRYTMSVWYCDAE |
Parental | ERARAKVKY |
ERA.AK.K. | |
Retrocopy | ERAEAKKKF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000007202 | 1 retrocopy |
retro_etel_1722 ,
|
Rattus norvegicus | ENSRNOG00000019773 | 11 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000023570 | 1 retrocopy |