RetrogeneDB ID: | retro_etel_1726 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_290182:42236..42672(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000013761 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78. % |
Parental protein coverage: | 57.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | ETFTVDEVSEVLSGLRAVVHSEVESELINTAH-TNVLLLRQLFAQAEKWYLKLQTDISELENRE-LEQVA |
ET.TVDEVSEVLSGLRAVVHSEVES.L.N.A..T.VLLLRQLFAQAEKWYL.LQ.DISEL.NR...EQVA | |
Retrocopy | ETVTVDEVSEVLSGLRAVVHSEVESQLLNGAP<TSVLLLRQLFAQAEKWYLRLQSDISELGNRV>VEQVA |
Parental | EFEVEFTSSNK-KPIADIMKPKL-AP-LNETGTAELLNKEILRLQEENEKLKSRLKTVEIQATSALDAKS |
EFE.....S.K.KPIADIMKPKL.AP.LNET.TAELL....LRLQEENE.L.SRLK.VEI.A.SALDAKS | |
Retrocopy | EFEKAELISSK<KPIADIMKPKL>AP>LNETSTAELLHRDMLRLQEENETLTSRLKNVEIRAISALDAKS |
Parental | KLERALRDAH |
KL.RALRDAH | |
Retrocopy | KLQRALRDAH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003899 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000013761 | 1 retrocopy |
retro_etel_1726 ,
|
Loxodonta africana | ENSLAFG00000010237 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025245 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000009783 | 1 retrocopy |