RetrogeneDB ID: | retro_etel_1755 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_292301:145017..145575(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000001004 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OSER1 | ||
Ensembl ID: | ENSETEG00000013561 | ||
Aliases: | None | ||
Description: | oxidative stress responsive serine-rich 1 [Source:HGNC Symbol;Acc:16105] |
Percent Identity: | 73.71 % |
Parental protein coverage: | 65.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MKSEAKDGEEESLQTAFKKLRVDASGSVAALSVGEGTGVRTSARTTTEDTKSKATGTAKDSWHGSTRKSS |
MKSEAKDGEEE.L.TAF.KLRVDASG.VAALSV.EG....TS.RTT.EDTK...T.TAKDS.HGSTR.SS | |
Retrocopy | MKSEAKDGEEERLHTAFQKLRVDASGAVAALSVREG----TSVRTTSEDTKVNTTCTAKDSCHGSTRTSS |
Parental | RGAARTQRRR-RSKSPVLHPPKFIHCSTLTASSSNQLKHKSQTESPDGSSGL-GISAPKEFTAGECVPPP |
.GAARTQR....SKSPVLH.P...HCSTLTASSS.QLKHKSQTES.DGSSGL.GIS.P...TAGECVPPP | |
Retrocopy | KGAARTQRQA<QSKSPVLHSPTLTHCSTLTASSSSQLKHKSQTESLDGSSGL<GISSPRRVTAGECVPPP |
Parental | PDTTHMGPVNEPLPTVVPGLRSES-TKEDCADVTQVSQANLKANHLSDFGSVSK |
PD..HMG.V.EPLP..V.GL.SES.......DVTQ.SQA.LKANHLSDFGSVS. | |
Retrocopy | PDAAHMGAVTEPLPAAVLGLQSES<LRQRLSDVTQGSQASLKANHLSDFGSVSR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008281 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000013561 | 1 retrocopy |
retro_etel_1755 ,
|
Mus musculus | ENSMUSG00000035399 | 1 retrocopy |